PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G055500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 334aa    MW: 36587.6 Da    PI: 7.6238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G055500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.83.1e-47171801128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.............leleevikevdiykvePwdLpk..........kvka..eekewyfFskrdk 66 
                         +ppGfrFhPt+eelv +yL++kv++++             +++ ++i+evd+y++ePwdL++          +  +   ++e+yfFs +d+
  Brast03G055500.1.p  17 VPPGFRFHPTEEELVGYYLARKVQATNsssssashnkmnkMDVLDIIQEVDLYRIEPWDLQErcgkygggggQ--EdpAREEYYFFSYKDR 105
                         69**********************9997777777666655555569**************9546766655432..13355699******** PP

                 NAM  67 kyatgkrknratksgyWkatgkdkevlsk......kgel.........vglkktLvfykgrapkgektdWvmheyrl 128
                         ky++g+r+nrat++g+Wkatg+dk+v+s+      +            +g++ktLvfy+grap+g+ktdW++heyrl
  Brast03G055500.1.p 106 KYPSGTRTNRATAAGFWKATGRDKPVMSSplssssS--SspatagmmmIGMRKTLVFYRGRAPNGRKTDWIIHEYRL 180
                         ****************************98876651..1455666666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-499201IPR003441NAC domain
PROSITE profilePS5100550.94217201IPR003441NAC domain
PfamPF023658.2E-2518180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEEQSSSSSS WCNTAAVPPG FRFHPTEEEL VGYYLARKVQ ATNSSSSSAS HNKMNKMDVL  60
DIIQEVDLYR IEPWDLQERC GKYGGGGGQE DPAREEYYFF SYKDRKYPSG TRTNRATAAG  120
FWKATGRDKP VMSSPLSSSS SSSPATAGMM MIGMRKTLVF YRGRAPNGRK TDWIIHEYRL  180
QSSQHAPTQE EGWVVCRAFV KPLPNQQQRF SSYGGGGGGY PMMNGGGGGY GSSYYYYYSD  240
SYPPSARLMP PHDEHHHGLP STAESKQHVQ LFSSAISGDM PPPLRSPTTL DGACVADEQL  300
AMAAGTTAVD WNLWSSLLQT PSTPPTTSSS KNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-391720115168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6934270.0JQ693427.1 Brachypodium distachyon SWN6 (SWN6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755377.11e-175PREDICTED: uncharacterized protein LOC100838301 isoform X2
SwissprotQ9C8W96e-77NAC30_ARATH; NAC domain-containing protein 30
TrEMBLI1I0A71e-175I1I0A7_BRADI; SWN6
STRINGBRADI3G13117.11e-175(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.17e-76vascular related NAC-domain protein 7